{"id":1265,"date":"2023-08-31T10:41:20","date_gmt":"2023-08-31T02:41:20","guid":{"rendered":"https:\/\/airy.cn\/WordPress\/?p=1265"},"modified":"2024-05-05T17:39:37","modified_gmt":"2024-05-05T09:39:37","slug":"pbs%e7%ae%80%e4%bb%8b","status":"publish","type":"post","link":"https:\/\/airy.cn\/WordPress\/?p=1265","title":{"rendered":"PBS\u7b80\u4ecb &#8211; PBS\u4f5c\u4e1a\u8c03\u5ea6\u8be6\u89e3"},"content":{"rendered":"\n<p><br>PBS(Portable Batch System)\u6700\u521d\u7531NASA\u7684Ames\u7814\u7a76\u4e2d\u5fc3\u5f00\u53d1\uff0c\u4e3b\u8981\u4e3a\u4e86\u63d0\u4f9b\u4e00\u4e2a\u80fd\u6ee1\u8db3\u5f02\u6784\u8ba1\u7b97\u7f51\u7edc\u9700\u8981\u7684\u8f6f\u4ef6\u5305\uff0c\u7528\u4e8e\u7075\u6d3b\u7684\u6279\u5904\u7406\uff0c\u7279\u522b\u662f\u6ee1\u8db3\u9ad8\u6027\u80fd\u8ba1\u7b97\u7684\u9700\u8981\uff0c\u5982\u96c6\u7fa4\u7cfb\u7edf\u3001\u8d85\u7ea7\u8ba1\u7b97\u673a\u548c\u5927\u89c4\u6a21\u5e76\u884c\u7cfb\u7edf\u3002<br>PBS\u662f\u529f\u80fd\u6700\u4e3a\u9f50\u5168, \u5386\u53f2\u6700\u60a0\u4e45, \u652f\u6301\u6700\u5e7f\u6cdb\u7684\u672c\u5730\u96c6\u7fa4\u8c03\u5ea6\u5668\u4e4b\u4e00\u3002PBS\u7684\u4e3b\u8981\u7279\u70b9\u6709\uff1a\u4ee3\u7801\u5f00\u653e\uff0c\u514d\u8d39\u83b7\u53d6\uff1b\u652f\u6301\u6279\u5904\u7406\u3001\u4ea4\u4e92\u5f0f\u4f5c\u4e1a\u548c\u4e32\u884c\u3001\u591a\u79cd\u5e76\u884c\u4f5c\u4e1a\uff0c\u5982MPI\u3001PVM\u3001HPF\u3001MPL\u3002<br>PBS\u7684\u76ee\u524d\u5305\u62ec\uff1aopenPBS, PBS Pro\u548cTorque\u4e09\u4e2a\u4e3b\u8981\u5206\u652f.<br>OpenPBS\uff1a\u662f\u6700\u65e9\u7684PBS\u7cfb\u7edf, \u76ee\u524d\u5df2\u7ecf\u6ca1\u6709\u592a\u591a\u540e\u7eed\u5f00\u53d1<br>PBS pro\uff1a\u662fPBS\u7684\u5546\u4e1a\u7248\u672c, \u529f\u80fd\u6700\u4e3a\u4e30\u5bcc<br>Torque\uff1a\u662fClustering\u516c\u53f8\u63a5\u8fc7\u4e86OpenPBS, \u5e76\u7ed9\u4e0e\u540e\u7eed\u652f\u6301\u7684\u4e00\u4e2a\u5f00\u6e90\u7248\u672c<br>\u5e94\u7528PBS\u63d0\u4ea4\u4efb\u52a1\u5219\u4f1a\u5f62\u6210\u4efb\u52a1\u961f\u5217\uff0c\u4f9d\u6b21\u6267\u884c\uff0c\u6709\u6548\u5206\u914d\u8d44\u6e90\uff0c\u907f\u514d\u8d44\u6e90\u7ade\u4e89\u3002\u5426\u5219CPU\u65f6\u95f4\u7247\u4f1a\u8f6e\u6d41\u5206\u914d\u7ed9\u5404\u4e2a\u4eba\u7684\u4efb\u52a1\uff0c\u4ece\u800c\u5f71\u54cd\u6240\u6709\u4eba\u7684\u6b63\u5e38\u4f5c\u4e1a\u3002<br>torque\u4e3b\u8981\u7531\u4e09\u4e2a\u4e3b\u8981\u90e8\u4ef6\u7ec4\u6210\uff1a<br>PBS\u670d\u52a1\u5b88\u62a4\u8fdb\u7a0b\uff1a pbs_server \u8d1f\u8d23\u63a5\u6536\u4f5c\u4e1a\u63d0\u4ea4\uff0c\u4f4d\u4e8e\u670d\u52a1\u8282\u70b9<br>PBS\u8c03\u5ea6\u5b88\u62a4\u8fdb\u7a0b\uff1a pbs_sched \u8d1f\u8d23\u8c03\u5ea6\u4f5c\u4e1a\uff0c\u4f4d\u4e8e\u670d\u52a1\u8282\u70b9<br>PBS MOM\u5b88\u62a4\u8fdb\u7a0b\uff1a pbs_mom \u8d1f\u8d23\u76d1\u63a7\u672c\u673a\u5e76\u6267\u884c\u4f5c\u4e1a\uff0c\u4f4d\u4e8e\u6240\u6709\u8ba1\u7b97\u8282\u70b9<\/p>\n\n\n\n<p>PBS \u662f\u516c\u5f00\u6e90\u4ee3\u7801\u7684\u4f5c\u4e1a\u7ba1\u7406\u7cfb\u7edf\uff0cpbspro\u662f\u8457\u540d\u7684open PBS\u7684\u5546\u4e1a\u7248\u3002<\/p>\n\n\n\n<p><a href=\"https:\/\/github.com\/PBSPro\/pbspro\/releases\">https:\/\/github.com\/PBSPro\/pbspro\/releases<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/github.com\/PBSPro\/pbspro\/blob\/master\/LICENSE\">https:\/\/github.com\/PBSPro\/pbspro\/blob\/master\/LICENSE<\/a><\/p>\n\n\n\n<hr class=\"wp-block-separator has-alpha-channel-opacity\"\/>\n\n\n\n<h2 class=\"wp-block-heading\">Open Source License for PBS Professional<\/h2>\n\n\n\n<p>Copyright (C) 1994-2019 Altair Engineering, Inc.<br>For more information, contact Altair at www.altair.com.<\/p>\n\n\n\n<p>This file is part of the PBS Professional (&#8220;PBS Pro&#8221;) software.<\/p>\n\n\n\n<p>Open Source License Information:<\/p>\n\n\n\n<p>PBS Pro is free software. You can redistribute it and\/or modify it under the<br>terms of the GNU Affero General Public License as published by the Free<br>Software Foundation, either version 3 of the License, or (at your option) any<br>later version.<\/p>\n\n\n\n<p>PBS Pro is distributed in the hope that it will be useful, but WITHOUT ANY<br>WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS<br>FOR A PARTICULAR PURPOSE.<br>See the GNU Affero General Public License for more details.<\/p>\n\n\n\n<p><\/p>\n\n\n\n<p><\/p>\n\n\n\n<p>PBS\u4f5c\u4e1a\u8c03\u5ea6\u8be6\u89e3<\/p>\n\n\n\n<p><strong>1\u3001PBS\u73af\u5883\u53d8\u91cf<\/strong><\/p>\n\n\n\n<figure class=\"wp-block-table\"><table><tbody><tr><td>\u73af\u5883\u53d8\u91cf<\/td><td>\u8bf4\u660e<\/td><\/tr><tr><td>PBS_ENVIRONMENT<\/td><td>\u6279\u5904\u7406\u4f5c\u4e1a\u4e3aPBS_BATCH\uff0c\u4ea4\u4e92\u5f0f\u4f5c\u4e1a\u4e3aPBS_INTERACTIVE<\/td><\/tr><tr><td>PBS_JOBID<\/td><td>PBS\u7cfb\u7edf\u7ed9\u4f5c\u4e1a\u5206\u914d\u7684\u6807\u8bc6\u53f7<\/td><\/tr><tr><td>PBS_JOBNAME<\/td><td>\u7528\u6237\u6307\u5b9a\u7684\u4f5c\u4e1a\u540d\u79f0<\/td><\/tr><tr><td>PBS_NODEFILE<\/td><td>\u5305\u542b\u4f5c\u4e1a\u6240\u7528\u8ba1\u7b97\u8282\u70b9\u7684\u4e3b\u673a\u540d<\/td><\/tr><tr><td>PBS_QUEUE<\/td><td>\u4f5c\u4e1a\u6240\u6267\u884c\u7684\u961f\u5217\u540d\u79f0<\/td><\/tr><tr><td>PBS_O_HOME<\/td><td>\u6267\u884cqsub\u547d\u4ee4\u7684HOME\u73af\u5883\u53d8\u91cf\u503c<\/td><\/tr><tr><td>PBS_O_PATH<\/td><td>\u6267\u884cqsub\u547d\u4ee4\u7684PATH\u73af\u5883\u53d8\u91cf\u503c<\/td><\/tr><tr><td>PBS_O_SHELL<\/td><td>\u6267\u884cqsub\u547d\u4ee4\u7684SHELL\u73af\u5883\u53d8\u91cf\u503c<\/td><\/tr><tr><td>PBS_O_HOST<\/td><td>\u6267\u884cqsub\u547d\u4ee4\u8282\u70b9\u540d\u79f0<\/td><\/tr><tr><td>PBS_O_QUEUE<\/td><td>\u63d0\u4ea4\u7684\u4f5c\u4e1a\u7684\u6700\u521d\u961f\u5217\u540d\u79f0<\/td><\/tr><tr><td>PBS_O_WORKDIR<\/td><td>\u6267\u884cqsub\u547d\u4ee4\u6240\u5728\u7684\u7edd\u5bf9\u8def\u5f84<\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n<p><strong>2\u3001PBS\u4f5c\u4e1a\u5c5e\u6027<\/strong><\/p>\n\n\n\n<figure class=\"wp-block-table\"><table><tbody><tr><td>\u5c5e\u6027<\/td><td>\u53d6\u503c<\/td><td>\u8bf4\u660e<\/td><\/tr><tr><td>-l<\/td><td>\u4ee5\u9017\u53f7\u5206\u9694\u7684\u8d44\u6e90\u5217\u8868<\/td><td>\u8bbe\u5b9a\u4f5c\u4e1a\u6240\u9700\u8d44\u6e90<\/td><\/tr><tr><td>-N<\/td><td>\u4f5c\u4e1a\u540d\u79f0<\/td><td>\u8bbe\u5b9a\u4f5c\u4e1a\u540d\u79f0<\/td><\/tr><tr><td>-o<\/td><td>\u6587\u4ef6\u8def\u5f84<\/td><td>\u8bbe\u5b9a\u4f5c\u4e1a\u7684\u6807\u51c6\u8f93\u51fa\u6587\u4ef6\u8def\u5f84<\/td><\/tr><tr><td>-e<\/td><td>\u6587\u4ef6\u8def\u5f84<\/td><td>\u8bbe\u5b9a\u4f5c\u4e1a\u7684\u6807\u51c6\u9519\u8bef\u6587\u4ef6\u8def\u5f84<\/td><\/tr><tr><td>-p<\/td><td>-1024\u5230+1023\u4e4b\u95f4\u7684\u6574\u6570<\/td><td>\u8bbe\u5b9a\u4f5c\u4e1a\u4f18\u5148\u7ea7\uff0c\u8d8a\u5927\u4f18\u5148\u7ea7\u8d8a\u9ad8<\/td><\/tr><tr><td>-q<\/td><td>\u961f\u5217\u540d\u79f0<\/td><td>\u8bbe\u5b9a\u4f5c\u4e1a\u961f\u5217\u540d\u79f0<\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n<p><strong>3\u3001\u4f5c\u4e1a\u8d44\u6e90\u8bbe\u7f6e<\/strong><\/p>\n\n\n\n<figure class=\"wp-block-table\"><table><tbody><tr><td>\u8d44\u6e90<\/td><td>\u53d6\u503c<\/td><td>\u8bf4\u660e<\/td><\/tr><tr><td>nodes<\/td><td>\u8282\u70b9\u8d44\u6e90\u6784\u578b<\/td><td>\u8bbe\u5b9a\u4f5c\u4e1a\u6240\u9700\u8ba1\u7b97\u8282\u70b9\u8d44\u6e90<\/td><\/tr><tr><td>walltime<\/td><td>Hh:mm:ss<\/td><td>\u8bbe\u5b9a\u4f5c\u4e1a\u6240\u9700\u7684\u6700\u5927wallclock\u65f6\u95f4<\/td><\/tr><tr><td>cput<\/td><td>Hh:mm:ss<\/td><td>\u8bbe\u5b9a\u4f5c\u4e1a\u6240\u9700\u7684\u6700\u5927CPU\u65f6\u95f4<\/td><\/tr><tr><td>mem<\/td><td>\u6b63\u6574\u6570\uff0c\u540e\u9762\u53ef\u8ddfb,kb,mb,gb<\/td><td>\u8bbe\u5b9a\u4f5c\u4e1a\u6240\u9700\u7684\u6700\u5927\u5185\u5b58<\/td><\/tr><tr><td>ncpus<\/td><td>\u6b63\u6574\u6570<\/td><td>\u8bbe\u5b9a\u4f5c\u4e1a\u6240\u9700\u7684CPU\u6570\u76ee<\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n<p>\u4f8b\u5982\uff1a<\/p>\n\n\n\n<p>nodes=2:ppn=28\uff0c\u5373\u8bbe\u5b9a\u8be5\u4f5c\u4e1a\u6240\u97002\u4e2a\u8282\u70b9\uff0c\u6bcf\u4e2a\u8282\u70b9\u4f7f\u752828\u6838\u3002<\/p>\n\n\n\n<p>Nodes=node1:ppn=10+node2:ppn=10\uff0c\u8bbe\u5b9anode1\u4e2d10\u4e2a\u6838\u6838node2\u4e2d10\u4e2a\u6838\u8ba1\u7b97\u3002<\/p>\n\n\n\n<p>\u811a\u672c\uff1a<\/p>\n\n\n\n<p>#!\/bin\/bash<\/p>\n\n\n\n<p>#PBS -l nodes=1:ppn=4<\/p>\n\n\n\n<p>#PBS -l walltime=1500:00:00<\/p>\n\n\n\n<p>#PBS -j oe<\/p>\n\n\n\n<p>#PBS -q batch<\/p>\n\n\n\n<p>source \/public\/software\/profile.d\/mpi_openmpi-intel-2.1.2.sh<\/p>\n\n\n\n<p>nodecpu=\u2019cat \/proc\/cpuinfo|grep processor|wc -l\u2019<\/p>\n\n\n\n<p>Id=\u2019echo $PBS_JOBID | awk -F. \u2018{print $1}\u2019\u2019<\/p>\n\n\n\n<p>NP=\u2019cat $PBS_NODEFILE|wc -l\u2019<\/p>\n\n\n\n<p>echo \u201cThe Jobbed is $id\u201d<\/p>\n\n\n\n<p>echo \u201cWorker dir is $PBS_O_WORKDIR\u201d<\/p>\n\n\n\n<p>cat $PBS_NODEFILE<\/p>\n\n\n\n<p>echo \u201cbegin time is \u2018date\u2019\u201d<\/p>\n\n\n\n<p>cd $PBS_O_WORKDIR<\/p>\n\n\n\n<p>mpirun -np 4 vasp_std<\/p>\n\n\n\n<p>echo \u201cEnd time is \u2018date\u2019\u201d<\/p>\n\n\n\n<p>\u91cd\u70b9\u53c2\u6570\u89e3\u91ca\uff1a<\/p>\n\n\n\n<p>source \/public\/software\/profile.d\/mpi_openmpi-intel-2.1.2.sh \u8868\u793aopenmpi\u751f\u6548<\/p>\n\n\n\n<p>nodecpu=\u2019cat \/proc\/cpuinfo|grep processor|wc -l\u2019 \u53cd\u5f15\u53f7\u5185\u4e3a\u8ba1\u7b97\u7cfb\u7edf\u53ef\u7528\u7684cpu\u6838\u6570\u76ee\uff0c\u7136\u540e\u8d4b\u503c\u7ed9\u53d8\u91cfnodecpu<\/p>\n\n\n\n<p>NP=\u2019cat $PBS_NODEFILE|wc -l\u2019 \u8ba1\u7b97\u7533\u8bf7\u7684CPU\u6838\u6570\u91cf\uff0c\u8d4b\u503c\u7ed9NP<\/p>\n\n\n\n<p>echo \u201cWorker dir is $PBS_O_WORKDIR\u201d \u8f93\u51fa\u5b57\u7b26\u4e32worker dir is\u548c\u811a\u672c\u6240\u5728\u8def\u5f84<\/p>\n\n\n\n<p>cat $PBS_NODEFILE \u8f93\u51fa\u4f5c\u4e1a\u6240\u7528\u8ba1\u7b97\u8282\u70b9\u7684\u4e3b\u673a\u540d<\/p>\n\n\n\n<p>echo \u201cbegin time is \u2018date\u2019\u201d \u8f93\u51fa\u4f5c\u4e1a\u5f00\u59cb\u65f6\u95f4<\/p>\n\n\n\n<p>cd $PBS_O_WORKDIR \u8fdb\u5165\u6240\u5728\u7684\u8def\u5f84<\/p>\n\n\n\n<p>echo \u201cEnd time is \u2018date\u2019\u201d \u8f93\u51fa\u4f5c\u4e1a\u505c\u6b62\u65f6\u95f4<\/p>\n\n\n\n<p><strong>4\u3001\u5e38\u7528\u7684\u4f5c\u4e1a\u63a7\u5236\u547d\u4ee4<\/strong><\/p>\n\n\n\n<p>qsub\uff1a\u63d0\u4ea4\u4f5c\u4e1a<\/p>\n\n\n\n<p>qdel\uff1a\u53d6\u6d88\u4f5c\u4e1a<\/p>\n\n\n\n<p>qsig\uff1a\u7ed9\u4f5c\u4e1a\u53d1\u9001\u4fe1\u53f7<\/p>\n\n\n\n<p>qhold\uff1a\u6302\u8d77\u4f5c\u4e1a<\/p>\n\n\n\n<p>qrls\uff1a\u91ca\u653e\u6302\u8d77\u7684\u4f5c\u4e1a<\/p>\n\n\n\n<p>qrerun\uff1a\u91cd\u65b0\u8fd0\u884c\u4f5c\u4e1a<\/p>\n\n\n\n<p>qmove\uff1a\u5c06\u4f5c\u4e1a\u79fb\u52a8\u5230\u53e6\u4e00\u4e2a\u961f\u5217<\/p>\n\n\n\n<p>qalter\uff1a\u66f4\u6539\u4f5c\u4e1a\u8d44\u6e90\u5c5e\u6027<\/p>\n\n\n\n<p>qsig -s KILL 1010 \u505c\u6b621010\u4f5c\u4e1a<\/p>\n\n\n\n<p>qdel -p<\/p>\n\n\n\n<p>\u5f3a\u5236\u5220\u9664\u4f5c\u4e1a\uff08\u5f53\u67d0\u4e9b\u4f5c\u4e1a\u7531\u4e8e\u8282\u70b9\u6b7b\u673a\u65e0\u6cd5\u5220\u9664\u65f6\uff0c\u53ef\u7531root\u7528\u6237\u767b\u5f55\uff0c\u4f7f\u7528qdel -p \u4f5c\u4e1a\u53f7\u6765\u5220\u9664\u4f5c\u4e1a\uff09<\/p>\n\n\n\n<p><strong>5\u3001\u4f5c\u4e1a\u68c0\u6d4b<\/strong><\/p>\n\n\n\n<figure class=\"wp-block-image\"><img decoding=\"async\" src=\"https:\/\/pic3.zhimg.com\/80\/v2-7d5fc4bcb3f057b83eabc00c462ecac2_720w.webp\" alt=\"\"\/><\/figure>\n\n\n\n<p>qstat [\u9009\u9879][\u4f5c\u4e1a\u53f7]<\/p>\n\n\n\n<p>\u9009\u9879<\/p>\n\n\n\n<p>-f\uff1a\u5217\u51fa\u6307\u5b9a\u4f5c\u4e1a\u7684\u4fe1\u606f<\/p>\n\n\n\n<p>-a\uff1a\u5217\u51fa\u7cfb\u7edf\u6240\u6709\u4f5c\u4e1a<\/p>\n\n\n\n<p>-i\uff1a\u5217\u51fa\u4e0d\u5728\u8fd0\u884c\u7684\u4f5c\u4e1a<\/p>\n\n\n\n<p>-n\uff1a\u5217\u51fa\u5206\u914d\u7ed9\u6b64\u4f5c\u4e1a\u7684\u7ed3\u70b9<\/p>\n\n\n\n<p>-B\uff1a\u5217\u51faPBS Server\u4fe1\u606f<\/p>\n\n\n\n<p>-q\uff1a\u5217\u51fa\u961f\u5217\u72b6\u6001<\/p>\n\n\n\n<p>-r\uff1a\u5217\u51fa\u6240\u6709\u6b63\u5728\u8fd0\u884c\u7684\u4f5c\u4e1a<\/p>\n\n\n\n<p><strong>6\u3001\u4f5c\u4e1a\u72b6\u6001<\/strong><\/p>\n\n\n\n<figure class=\"wp-block-image\"><img decoding=\"async\" src=\"https:\/\/pic2.zhimg.com\/80\/v2-9acff0a51387455b4d5a541b8ed9880d_720w.webp\" 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